Publications

Questions? Contact Academic Research Systems (ARS)

Overview

Working in partnership with researchers, our team members sometimes help to make original contributions to research, serve as co-investigators on projects, and support publication and dissemination efforts.

Selected publications

  1. A certified de-identification system for all clinical text documents for information extraction at scale. JAMIA Open. 2023 Jul 4;6(3):ooad045. Radhakrishnan L, Schenk G, Muenzen K, Oskotsky B, Ashouri Choshali H, Plunkett T, Israni S, Butte AJ. doi: 10.1093/jamiaopen/ooad045. PMID: 37416449; PMCID: PMC10320112.
  2. Machine-Learning Algorithm to Improve Cohort Identification in Interstitial Lung Disease. Am J Respir Crit Care Med. 2023 May 15;207(10):1398-1401. Farrand E, Gologorskaya O, Mills H, Radhakrishnan L, Collard HR, Butte AJ. doi: 10.1164/rccm.202211-2092LE. PMID: 36943196.
  3. Electrocardiogram Detection of Pulmonary Hypertension Using Deep Learning. J Card Fail. 2023 Jul;29(7):1017-1028. Aras MA, Abreau S, Mills H, Radhakrishnan L, Klein L, Mantri N, Rubin B, Barrios J, Chehoud C, Kogan E, Gitton X, Nnewihe A, Quinn D, Bridges C, Butte AJ, Olgin JE, Tison GH. doi: 10.1016/j.cardfail.2022.12.016. Epub 2023 Jan 24. PMID: 36706977; PMCID: PMC10363571.
  4. Predictors of long-term neutralizing antibody titers following COVID-19 vaccination by three vaccine types: the BOOST study. Sci Rep. 2023 05 09; 13(1):6505. Prather AA, Dutcher EG, Robinson J, Lin J, Blackburn E, Hecht FM, Mason AE, Fromer E, Merino B, Frazier R, O'Bryan J, Drury S, Epel ES. PMID: 37160978; PMCID: PMC10170073.
  5. Clinical Decision Support for Newborn Weight Loss: A Randomized Controlled Trial. Hosp Pediatr. 2022 Jun 1;12(6):e180-e184. Flaherman VJ, Robinson A, Creasman J, McCulloch CE, Paul IM, Pletcher MJ. doi: 10.1542/hpeds.2021-006470. PMID: 35611641.
  6. Would chronotype change the impact of the relationship between early school schedules and adolescent migraine frequency? A response. Headache. 2021 02; 61(2):404-405. Gelfand AA, Ross AC, Pavitt S, Szperka CL, Irwin SL, Bertisch S, Stone KL, Frazier R, Grimes B, Allen IE. PMID: 33544394.
  7. Later high school start time is associated with lower migraine frequency in adolescents. Headache. 2021 02; 61(2):343-350. Gelfand AA, Pavitt S, Ross AC, Szperka CL, Irwin SL, Bertisch S, Stone KL, Frazier R, Grimes B, Allen IE. PMID: 33237581; PMCID: PMC8074009.
  8. Safety and efficacy of amantadine, modafinil, and methylphenidate for fatigue in multiple sclerosis: a randomised, placebo-controlled, crossover, double-blind trial. Lancet Neurol. 2021 Jan;20(1):38-48. Nourbakhsh B, Revirajan N, Morris B, Cordano C, Creasman J, Manguinao M, Krysko K, Rutatangwa A, Auvray C, Aljarallah S, Jin C, Mowry E, McCulloch C, Waubant E. doi: 10.1016/S1474-4422(20)30354-9. Epub 2020 Nov 23. PMID: 33242419; PMCID: PMC7772747.
  9. Academic Emergency Medicine Physicians' Anxiety Levels, Stressors, and Potential Stress Mitigation Measures During the Acceleration Phase of the COVID-19 Pandemic. Acad Emerg Med. 2020 08; 27(8):700-707. Rodriguez RM, Medak AJ, Baumann BM, Lim S, Chinnock B, Frazier R, Cooper RJ. PMID: 32569419; PMCID: PMC7361565.
  10. PatientExploreR: an extensible application for dynamic visualization of patient clinical history from electronic health records in the OMOP common data model. Bioinformatics. 2019 11 01; 35(21):4515-4518. Glicksberg BS, Oskotsky B, Thangaraj PM, Giangreco N, Badgeley MA, Johnson KW, Datta D, Rudrapatna VA, Rappoport N, Shervey MM, Miotto R, Goldstein TC, Rutenberg E, Frazier R, Lee N, Israni S, Larsen R, Percha B, Li L, Dudley JT, Tatonetti NP, Butte AJ. PMID: 31214700; PMCID: PMC6821222.
  11. ROMOP: a light-weight R package for interfacing with OMOP-formatted electronic health record data. JAMIA Open. 2019 Apr; 2(1):10-14. Glicksberg BS, Oskotsky B, Giangreco N, Thangaraj PM, Rudrapatna V, Datta D, Frazier R, Lee N, Larsen R, Tatonetti NP, Butte AJ. PMID: 31633087; PMCID: PMC6800657.
  12. Novel computational methods on electronic health record yields new estimates of transfusion-associated circulatory overload in populations enriched with high-risk patients. Transfusion. 2023 Jul;63(7):1298-1309. Wang M, Goldgof GM, Patel A, Whitaker B, Belov A, Chan B, Phelps E, Rubin B, Anderson S, Butte AJ. doi: 10.1111/trf.17447. Epub 2023 May 29. PMID: 37248741; PMCID: PMC10449535.